Silicon and oxygen are two of the most common elements on Earth. Together, they make up nearly 75 percent of the Earth's crust, so it is no surprise that they play major roles in forming many of the minerals that we see in rocks. The silicon atom, which has four electrons in its outermost region, likes to form chemical bonds with oxygen atoms, which are attracted to extra electrons. Thus, silicon and oxygen, together with some of the metallic elements, can combine to make hundreds of different minerals. For example, quartz has two oxygen atoms for every silicon atom, and feldspar has two or three silicon atoms grouped with eight oxygen atoms and a few metal atoms. About half of the most common minerals found on Earth belong to the silicate group, as do some beautiful gemstones such as amethyst, opal, and topaz.

Inside a mineral, atoms arrange themselves into a specific, repeating pattern called a crystal lattice or crystal structure. The smallest three-dimensional arrangement within the lattice is called a "unit cell," which is duplicated over and over again symmetrically. At the level of the everyday world, minerals that are growing without outside interference tend to form crystals that resemble their underlying crystal structures. Scientists call that kind of general, typical appearance a "crystal habit." Of course, conditions that existed during a mineral's formation or crystal growth may change its habit, but geologists still find this attribute to be a useful tool for identifying minerals. Scientists use more than three dozen adjectives to describe crystal habits. For example, natrolite and rutile can be acicular, or needlelike; quartz often forms hexagonal prisms; pyrite and halite typically crystallize as cubes; and mica is foliated or lamellar (layered).

Gemstones are minerals that are cut and polished to make beautiful "stones" for jewelry and other adornments. Humans traditionally consider diamonds, rubies, sapphires, and emeralds to be the four "precious" gemstones, with all other gemstones called "semiprecious." Many gems are transparent, meaning they allow some or most of the incident light to pass through them. To make a stone sparkle, gemcutters cut and polish the facets, or flat outer surfaces, of a gemstone to boost the number of times a light beam will reflect internally before leaving the stone and reaching the eye. Some semiprecious stones, such as malachite and lapis lazuli (a rock containing the mineral lazurite), are opaque to light; gemcutters polish them to a high gloss, without facets. This shiny, rounded type of gemstone is called a cabochon. Corundum (ruby or sapphire) specimens that contain tiny fibers of other minerals also may be cut into cabochons to create a luminous "star" effect on the stone's surface.